Publications
1. Magee, M; Spokony, R (2023). Effect of D. melanogaster larval density on pupal size. microPublication Biology. 10.17912/micropub.biology.000959.
2. Lopatto D, Rosenwald AG, Burgess RC, Silver Key C, Van Stry M, Wawersik M, DiAngelo JR, Hark AT, Skerritt M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bedard JEJ, Bose I, Braverman JM, Burg MG, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Toering Peters S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein- Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Elgin SCR, Reed LK. Student Attitudes Contribute to the Effectiveness of a Genomics CURE. J Microbiol Biol Educ. 2022 May 16;23(2):e00208-21. doi: 10.1128/jmbe.00208-21. PMID: 36061313; PMCID: PMC9429879.
3. Lopatto D, Rosenwald AG, DiAngelo JR, Hark AT, Skerritt M, Wawersik M, Allen AK, Alvarez C, Anderson S, Arrigo C, Arsham A, Barnard D, Bazinet C, Bedard JEJ, Bose I, Braverman JM, Burg MG, Burgess RC, Croonquist P, Du C, Dubowsky S, Eisler H, Escobar MA, Foulk M, Furbee E, Giarla T, Glaser RL, Goodman AL, Gosser Y, Haberman A, Hauser C, Hays S, Howell CE, Jemc J, Johnson ML, Jones CJ, Kadlec L, Kagey JD, Keller KL, Kennell J, Key SCS, Kleinschmit AJ, Kleinschmit M, Kokan NP, Kopp OR, Laakso MM, Leatherman J, Long LJ, Manier M, Martinez-Cruzado JC, Matos LF, McClellan AJ, McNeil G, Merkhofer E, Mingo V, Mistry H, Mitchell E, Mortimer NT, Mukhopadhyay D, Myka JL, Nagengast A, Overvoorde P, Paetkau D, Paliulis L, Parrish S, Preuss ML, Price JV, Pullen NA, Reinke C, Revie D, Robic S, Roecklein-Canfield JA, Rubin MR, Sadikot T, Sanford JS, Santisteban M, Saville K, Schroeder S, Shaffer CD, Sharif KA, Sklensky DE, Small C, Smith M, Smith S, Spokony R, Sreenivasan A, Stamm J, Sterne-Marr R, Teeter KC, Thackeray J, Thompson JS, Peters ST, Van Stry M, Velazquez-Ulloa N, Wolfe C, Youngblom J, Yowler B, Zhou L, Brennan J, Buhler J, Leung W, Reed LK, Elgin SCR. Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience. J Microbiol Biol Educ. 2020 Feb 28;21(1):21.1.6. doi: 10.1128/jmbe.v21i1.2005. PMID: 32148609; PMCID: PMC7048401.
4. Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, et al. Centrosomin represses dendrite branching by orienting microtubule nucleation. Nature neuroscience. 2015; 18(10):1437-45. PubMed [journal] PMID: 26322925
5. Chanut-Delalande H, Hashimoto Y, Pelissier-Monier A, Spokony R, Dib A, et al. Pri peptides are mediators of ecdysone for the temporal control of development. Nature cell biology. 2014; 16(11):1035-44. PubMed [journal] PMID: 25344753
6. Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 2014; 512(7515):453-6. NIHMSID: NIHMS612894 PubMed [journal] PMID: 25164757, PMCID: PMC4336544
7. Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, et al. Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster. Genome research. 2014; 24(7):1224-35. PubMed [journal] PMID: 24985916, PMCID: PMC4079976
8. Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, et al. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome research. 2014; 24(7):1115-24. PubMed [journal] PMID: 24985914, PMCID: PMC4079967
9. Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, et al. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Genome biology. 2013; 14(8):R86. PubMed [journal] PMID: 23972280, PMCID: PMC4053989
10. Greer C, Lee M, Westerhof M, Milholland B, Spokony R, et al. Myc-dependent genome instability and lifespan in Drosophila. PloS one. 2013; 8(9):e74641. PubMed [journal] PMID: 24040302, PMCID: PMC3765364
11. Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, et al. Evidence of abundant stop codon readthrough in Drosophila and other metazoa. Genome research. 2011; 21(12):2096-113. PubMed [journal] PMID: 21994247, PMCID: PMC3227100
12. Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, et al. A cis-regulatory map of the Drosophila genome. Nature. 2011; 471(7339):527-31. NIHMSID: NIHMS322898 PubMed [journal] PMID: 21430782, PMCID: PMC3179250
13. Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 2010; 330(6012):1787-97. NIHMSID: NIHMS302053 PubMed [journal] PMID: 21177974, PMCID: PMC3192495
14. Spokony RF, Restifo LL. Broad Complex isoforms have unique distributions during central nervous system metamorphosis in Drosophila melanogaster. The Journal of comparative neurology. 2009; 517(1):15-36. PubMed [journal] PMID: 19711379
15. Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, et al. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nature methods. 2009; 6(6):431-4. NIHMSID: NIHMS112300 PubMed [journal] PMID: 19465919, PMCID: PMC2784134
16. Spokony RF, Restifo LL. Anciently duplicated Broad Complex exons have distinct temporal functions during tissue morphogenesis. Development genes and evolution. 2007; 217(7):499-513. PubMed [journal] PMID: 17530286
17. Spokony RF, Aoki Y, Saint-Germain N, Magner-Fink E, Saint-Jeannet JP. The transcription factor Sox9 is required for cranial neural crest development in Xenopus. Development (Cambridge, England). 2002; 129(2):421-32. PubMed [journal] PMID: 11807034
18. Tamai K, Semenov M, Kato Y, Spokony R, Liu C, et al. LDL-receptor-related proteins in Wnt signal transduction. Nature. 2000; 407(6803):530-5. PubMed [journal] PMID: 11029007
19. Spokony R, Saint-Jeannet JP. Xenopus FK 506-binding protein, a novel immunophilin expressed during early development. Mechanisms of development. 2000; 94(1-2):205-8. PubMed [journal] PMID: 10842073
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